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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15191408_15191615_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15191408 - 15191615
Intron Length:
208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCCCA
5'SS Class:
major
3'SS Sequence:
TCTACTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTGCTTCTACT
Flanking Amino Acid:
MMIRPEARYRAENIVLLELD
Intron Amino Acid Position:
650

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
62.5
43.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.2
0.68
0.8
72.5
37.5
Minor 5ss
37.7
-1.4
3
40.8
45
Minor BPS
55.4
0.25
2
80.12
42

Associated Gene:

Gene:
KIF3B
Ensembl Gene ID:
ENSAPLG00000004629
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004790
15188451 - 15198579
10129