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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15191722_15192423_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15191722 - 15192423
Intron Length:
702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTGTA
5'SS Class:
major
3'SS Sequence:
TGTGTTTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTAAT
U12 Branch Point Sequence:
TGGTGCCTAATG
Flanking Amino Acid:
QWKLHPITRLDNQQMMKRPV
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
71.3
34.5
Major BPS
64.2
0.35
1.3
65.8
39.5
Major PPT
77.9
0.63
0.9
70.2
41.3
Minor 5ss
32.1
-2
3.3
36.5
41.7
Minor BPS
47.9
-0.3
2.1
56.62
45

Associated Gene:

Gene:
KIF3B
Ensembl Gene ID:
ENSAPLG00000004629
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004790
15188451 - 15198579
10129