About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_151921_153052_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
151921 - 153052
Intron Length:
1132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GTATGTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAG
U12 Branch Point Sequence:
TCCTGTATAAGA
Flanking Amino Acid:
FDNWDDTYDYWCDPSSPYIH
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
67.2
0.43
1.5
77.4
37.3
Major PPT
71.7
0.49
0.9
62.7
44
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
43.8
-0.4
2.2
55.03
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014035
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014666
145170 - 162852
17683