About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15192892_15193002_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15192892 - 15193002
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTGTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
ATGACTTCAGCT
Flanking Amino Acid:
VDIKTKKLKKLFSKLQAVKA
Intron Amino Acid Position:
537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
81.1
0.7
0.9
73.1
42.1
Minor 5ss
32.2
-2
3
40.7
45.1
Minor BPS
48.9
-0
1.8
67.49
43.3

Associated Gene:

Gene:
KIF3B
Ensembl Gene ID:
ENSAPLG00000004629
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004790
15188451 - 15198579
10129