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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15193126_15193809_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15193126 - 15193809
Intron Length:
684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAGGA
5'SS Class:
major
3'SS Sequence:
TCACATTCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAT
U12 Branch Point Sequence:
TGGTCCCTAACA
Flanking Amino Acid:
EQKRQEIAEQKRREREIQQQ
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
59.6
39.7
Major BPS
68.9
0.47
1
75
30
Major PPT
76.6
0.6
0.9
73.3
36.6
Minor 5ss
28.1
-2.5
3.5
38.8
46.3
Minor BPS
69
0.59
1.7
77.23
39.3

Associated Gene:

Gene:
KIF3B
Ensembl Gene ID:
ENSAPLG00000004629
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004790
15188451 - 15198579
10129