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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15193912_15194520_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15193912 - 15194520
Intron Length:
609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAACTC
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
AAACTTATGACC
Flanking Amino Acid:
ATEMLSAKIKAMESKLLVGG
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
63.2
41.7
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
34.5
-1.8
3.6
50.3
46.3
Minor BPS
46
-0.3
1.5
51.53
32.2

Associated Gene:

Gene:
KIF3B
Ensembl Gene ID:
ENSAPLG00000004629
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004790
15188451 - 15198579
10129