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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15201785_15201908_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15201785 - 15201908
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
ATTAATTTACTT
Flanking Amino Acid:
KEIQQFFQGKVKVVSLQPEV
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72
39.3
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
79.9
0.67
0.8
73.8
31.3
Minor 5ss
33.7
-1.9
3.5
47
48.3
Minor BPS
50.8
0.1
1.8
71.81
39.5

Associated Gene:

Gene:
POFUT1
Ensembl Gene ID:
ENSAPLG00000004951
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005112
15201596 - 15205784
4189