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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15202152_15202417_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15202152 - 15202417
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGGCTC
5'SS Class:
major
3'SS Sequence:
CTTCTTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAC
U12 Branch Point Sequence:
CTTCTTCCAACA
Flanking Amino Acid:
GIHLRIGSDWKNACNMLKDG
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
60.4
44.3
Major BPS
67.4
0.43
1
73.2
28.9
Major PPT
77.8
0.63
0.8
73.7
29.9
Minor 5ss
41
-1
3.3
50.7
46
Minor BPS
47
-0.2
1.8
61.19
39

Associated Gene:

Gene:
POFUT1
Ensembl Gene ID:
ENSAPLG00000004951
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005112
15201596 - 15205784
4189