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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15203954_15204413_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15203954 - 15204413
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
CCGCCGCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAG
U12 Branch Point Sequence:
CCCGCGGTGAGG
Flanking Amino Acid:
YRHHRPPYTNLHVPYEQYFK
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.3
65.8
40.2
Major BPS
51.1
0.03
1.5
51.1
44.3
Major PPT
61.2
0.25
0.9
53.4
31
Minor 5ss
36.6
-1.5
2.8
43.8
36.7
Minor BPS
30.9
-1.6
2.5
28.73
42.8

Associated Gene:

Gene:
POFUT1
Ensembl Gene ID:
ENSAPLG00000004951
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005112
15201596 - 15205784
4189