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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15204536_15204625_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15204536 - 15204625
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGCCC
5'SS Class:
major
3'SS Sequence:
TCTCCCCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAG
U12 Branch Point Sequence:
GGAGGCTGAGGC
Flanking Amino Acid:
AGYLLYCPCMGRFGNQAEHL
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
57.4
41.8
Major BPS
43.9
-0.3
1.6
36.8
44.4
Major PPT
76.5
0.6
0.7
73.5
24.7
Minor 5ss
26.1
-2.7
3
26
36.4
Minor BPS
35
-1.1
2
37.59
39.7

Associated Gene:

Gene:
POFUT1
Ensembl Gene ID:
ENSAPLG00000004951
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005112
15201596 - 15205784
4189