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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15206045_15206998_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
15206045 - 15206998
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
CAAAGTTGAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
73.4
37.5
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
84.4
0.77
0.8
81.3
30.7
Minor 5ss
33
-1.9
3.2
43.8
43.8
Minor BPS
46
-0.2
1.9
59.58
43.4

Associated Gene:

Gene:
PLAGL2
Ensembl Gene ID:
ENSAPLG00000005061
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005214
15205984 - 15211124
5141