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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15207218_15208592_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
15207218 - 15208592
Intron Length:
1375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGAGCA
5'SS Class:
major
3'SS Sequence:
TCTGTGATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAC
U12 Branch Point Sequence:
TCTTCTGTGATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
59.7
39.8
Major BPS
61.1
0.28
1.1
69.4
35.9
Major PPT
75.7
0.58
1
66
44.1
Minor 5ss
28.9
-2.4
3.5
30.4
42.9
Minor BPS
57.3
0.31
2
78.01
39.5

Associated Gene:

Gene:
PLAGL2
Ensembl Gene ID:
ENSAPLG00000005061
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032772
15206544 - 15211124
4581
ENSAPLT00000019337
15204809 - 15211124
6316
ENSAPLT00000005214
15205984 - 15211124
5141