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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15208988_15209902_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15208988 - 15209902
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAA
U12 Branch Point Sequence:
CTAGTCTAAACT
Flanking Amino Acid:
KAFASKYKLYRHMATHSAQK
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
81.4
32.7
Major BPS
67.6
0.44
1.2
69.9
35.3
Major PPT
67.2
0.39
1
69.1
30.5
Minor 5ss
34.6
-1.7
3
44.4
43.7
Minor BPS
55.5
0.25
1.8
71.66
45.5

Associated Gene:

Gene:
PLAGL2
Ensembl Gene ID:
ENSAPLG00000005061
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019337
15204809 - 15211124
6316
ENSAPLT00000005214
15205984 - 15211124
5141
ENSAPLT00000032772
15206544 - 15211124
4581