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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15221515_15221899_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15221515 - 15221899
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTCA
5'SS Class:
major
3'SS Sequence:
TCTTCTGTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTATTTTTAACT
Flanking Amino Acid:
IYAIFYFVNKLDIVEFIPSL
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
63.8
36.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
82
0.72
0.8
80.7
31.3
Minor 5ss
43.2
-0.7
3
57
47.2
Minor BPS
83.1
1.12
0.9
92.23
29.9

Associated Gene:

Gene:
TM9SF4
Ensembl Gene ID:
ENSAPLG00000005176
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005392
15221365 - 15234231
12867