Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15225321_15225893_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

15225321 - 15225893

Intron Length:

573

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTATGATGT

5'SS Class:

weak_major

3'SS Sequence:

CTTGTTGCTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

ATTTAAATAACT

Flanking Amino Acid:

IANYNKEDDIEDTMEESGWK

Intron Amino Acid Position:

342

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.6

0.32

1.1

59.9

39.5

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

78.7

0.65

0.9

72.3

37.9

Minor 5ss

48.3

-0.1

2.9

70.4

41.2

Minor BPS

55.6

0.25

82.36

37.8

Associated Gene:

Gene:

TM9SF4

Ensembl Gene ID:

ENSAPLG00000005176

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005392

15221365 - 15234231

12867