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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15226575_15226767_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15226575 - 15226767
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
GCTGTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TCCTGCTCACAC
Flanking Amino Acid:
MLFTYSVHWEESDIKWASRW
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
80.5
0.69
0.9
76.9
37.3
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
41.8
-0.6
2.2
51.17
45.8

Associated Gene:

Gene:
TM9SF4
Ensembl Gene ID:
ENSAPLG00000005176
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005392
15221365 - 15234231
12867