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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15226887_15227257_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15226887 - 15227257
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TTTTCTGTTACA
Flanking Amino Acid:
EVIPQSIKQEDLKADEKGMC
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
88.8
0.87
0.8
83.7
31.3
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
57.4
0.23
2.3
78.96
37.6

Associated Gene:

Gene:
TM9SF4
Ensembl Gene ID:
ENSAPLG00000005176
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005392
15221365 - 15234231
12867