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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15228765_15228842_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15228765 - 15228842
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTCAC
5'SS Class:
major
3'SS Sequence:
TATGTGCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTGATCTGAAAT
Flanking Amino Acid:
ERIREDYYVHLIADNLPVAT
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
61.7
38.8
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
78
0.63
0.9
73.8
41.4
Minor 5ss
32
-2.1
3
45.5
42.6
Minor BPS
57.5
0.31
1.6
74.81
41.5

Associated Gene:

Gene:
TM9SF4
Ensembl Gene ID:
ENSAPLG00000005176
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005392
15221365 - 15234231
12867