About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15230886_15234147_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15230886 - 15234147
Intron Length:
3262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAGGG
5'SS Class:
major
3'SS Sequence:
CTCCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
AGTATGTTAATA
Flanking Amino Acid:
TRGSKMAAAMERLRCLLVLL
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
58.6
40.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
87.7
0.85
0.7
83.2
25.1
Minor 5ss
24.5
-2.9
3.1
26.1
39
Minor BPS
49.7
-0
2
62.73
37.7

Associated Gene:

Gene:
TM9SF4
Ensembl Gene ID:
ENSAPLG00000005176
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005392
15221365 - 15234231
12867