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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15236084_15237191_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
15236084 - 15237191
Intron Length:
1108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGGAG
5'SS Class:
major
3'SS Sequence:
TTAAAGAAATCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTAAAGAAAT
Flanking Amino Acid:
IEDNEYTAREVTKCGTFTRS
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
60
40.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
53.1
0.07
1.1
49.8
46.6
Minor 5ss
21.7
-3.3
3.4
27.2
44.5
Minor BPS
45.4
-0.2
2.2
74.34
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029597
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026369
15236019 - 15237757
1739