Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15251611_15251735_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15251611 - 15251735

Intron Length:

125

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGGCCG

5'SS Class:

major

3'SS Sequence:

CTGTGCCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAG

U12 Branch Point Sequence:

CTGTGCTGAGCC

Flanking Amino Acid:

RALHKDPEPEGKAMVCFGNM

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.1

44.7

Major BPS

52.2

0.06

1.6

51.1

46.3

Major PPT

73.5

0.53

0.9

66.1

35.8

Minor 5ss

25.2

-2.9

22.7

36.8

Minor BPS

46.5

-0.2

2.1

58.89

Associated Gene:

Gene:

PDRG1

Ensembl Gene ID:

ENSAPLG00000023298

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043918

15251353 - 15252630

1278