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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15251811_15252152_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15251811 - 15252152
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACGGAGA
5'SS Class:
major
3'SS Sequence:
CCTTTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCCTTCTTATCC
Flanking Amino Acid:
KARTKEMMQKDQEHLDEEIN
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
60.7
45.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
88
0.85
0.6
87.3
23.2
Minor 5ss
30.1
-2.3
3.2
31
42.6
Minor BPS
63.5
0.4
1.6
69.18
42.9

Associated Gene:

Gene:
PDRG1
Ensembl Gene ID:
ENSAPLG00000023298
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043918
15251353 - 15252630
1278