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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15254661_15255216_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15254661 - 15255216
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTACT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GGTATTTTCATT
Flanking Amino Acid:
NGNFMANTHLGCYNDRKQQL
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
84.6
33
Major BPS
100
1.24
0.5
100
0
Major PPT
84.5
0.78
0.8
78.7
33.7
Minor 5ss
37.3
-1.4
3
52.4
44.2
Minor BPS
48.7
-0
1.7
65.34
39.8

Associated Gene:

Gene:
TTLL9
Ensembl Gene ID:
ENSAPLG00000006364
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037644
15254389 - 15264888
10500
ENSAPLT00000030230
15254389 - 15265811
11423
ENSAPLT00000006627
15254389 - 15265052
10664