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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15255939_15257637_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15255939 - 15257637
Intron Length:
1699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGGGTG
5'SS Class:
major
3'SS Sequence:
CTTATCTCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
CTTGTCTTATCT
Flanking Amino Acid:
YDILIDRNLKPWLLEVNASP
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.4
59.1
45.8
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
79.6
0.67
0.8
77.2
31.4
Minor 5ss
34.7
-1.7
3.7
51
45.9
Minor BPS
62.3
0.46
1.8
78.81
43.9

Associated Gene:

Gene:
TTLL9
Ensembl Gene ID:
ENSAPLG00000006364
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037644
15254389 - 15264888
10500
ENSAPLT00000030230
15254389 - 15265811
11423
ENSAPLT00000006627
15254389 - 15265052
10664