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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15259679_15259764_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15259679 - 15259764
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
CCTTTTCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
CGGTGCTCAGTT
Flanking Amino Acid:
DLRVYVLVTSYIPLKAWLYR
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.3
66.3
39.6
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
83.5
0.75
0.7
76.2
32.4
Minor 5ss
34.8
-1.7
3.2
46.2
42.2
Minor BPS
43
-0.4
2.1
56.51
46.2

Associated Gene:

Gene:
TTLL9
Ensembl Gene ID:
ENSAPLG00000006364
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037644
15254389 - 15264888
10500
ENSAPLT00000030230
15254389 - 15265811
11423
ENSAPLT00000006627
15254389 - 15265052
10664