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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15259806_15260407_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15259806 - 15260407
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
CTATTCTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
ATTGCATTATTT
Flanking Amino Acid:
QYIENPYLIGGRKFDLRVYV
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
76.9
0.61
0.8
72.5
32.1
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
53.2
0.18
1.9
75.4
41.6

Associated Gene:

Gene:
TTLL9
Ensembl Gene ID:
ENSAPLG00000006364
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037644
15254389 - 15264888
10500
ENSAPLT00000030230
15254389 - 15265811
11423
ENSAPLT00000006627
15254389 - 15265052
10664