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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15260499_15260780_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15260499 - 15260780
Intron Length:
282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
GTTTCTTGAAAG
Flanking Amino Acid:
KLKDIVDWKKDGGRTEEQKD
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
82.1
0.72
0.8
76.3
32.3
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
60.7
0.2
1.6
66.62
40.7

Associated Gene:

Gene:
TTLL9
Ensembl Gene ID:
ENSAPLG00000006364
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037644
15254389 - 15264888
10500
ENSAPLT00000030230
15254389 - 15265811
11423
ENSAPLT00000006627
15254389 - 15265052
10664