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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15264889_15265004_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15264889 - 15265004
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGCCG
5'SS Class:
major
3'SS Sequence:
CCTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCCT
U12 Branch Point Sequence:
CTCTCCTCTCCG
Flanking Amino Acid:
CGACAMAGRRAAAPRAPKKP
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
54
44.7
Major BPS
32.7
-1
4.2
69
38.9
Major PPT
75
0.56
0.7
69
24.7
Minor 5ss
25.2
-2.9
3
22.7
36.8
Minor BPS
36.4
-1.2
3.6
51.38
48.6

Associated Gene:

Gene:
TTLL9
Ensembl Gene ID:
ENSAPLG00000006364
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006627
15254389 - 15265052
10664