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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15291480_15291865_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15291480 - 15291865
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTGGG
5'SS Class:
major
3'SS Sequence:
TTGACTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
CTCCTCTTGACT
Flanking Amino Acid:
KKYVMRRRWKKNFIGVCAAN
Intron Amino Acid Position:
916

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
63.3
43.1
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
82.2
0.72
0.9
76.1
37.8
Minor 5ss
25.6
-2.8
3.1
31.6
42.7
Minor BPS
66.4
0.6
1.3
75.91
41.1

Associated Gene:

Gene:
MYLK2
Ensembl Gene ID:
ENSAPLG00000019376
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024215
15290847 - 15296659
5813