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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15292526_15292643_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15292526 - 15292643
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTACGTCGG
5'SS Class:
major
3'SS Sequence:
TCCGCTCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCCTGCTCACCC
Flanking Amino Acid:
MWSMGVITYMLLSGLSPFLG
Intron Amino Acid Position:
820

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.1
0.26
1.2
48
47.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
70.4
0.46
0.8
61.3
35
Minor 5ss
35.5
-1.7
3.2
50.5
45.8
Minor BPS
42.8
-0.5
2.2
49.59
47.1

Associated Gene:

Gene:
MYLK2
Ensembl Gene ID:
ENSAPLG00000019376
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024215
15290847 - 15296659
5813