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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15292935_15293031_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15292935 - 15293031
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGGGGA
5'SS Class:
major
3'SS Sequence:
CCTCTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TGGGCTCTGACC
Flanking Amino Acid:
HMRVLHLDLKPENILCVAAT
Intron Amino Acid Position:
754

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.3
40.6
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
75
0.56
0.7
69
24.7
Minor 5ss
22.1
-3.2
3.4
29
43.5
Minor BPS
48.3
-0.1
1.8
58.76
40.7

Associated Gene:

Gene:
MYLK2
Ensembl Gene ID:
ENSAPLG00000019376
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024215
15290847 - 15296659
5813