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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15308313_15308440_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15308313 - 15308440
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTAATACCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTAATTTAATA
Flanking Amino Acid:
ARRSLPGPLASSGSKEKLTE
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
72.3
39
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
68.3
0.41
0.9
60
41.1
Minor 5ss
31
-2.2
3.2
39.6
45.9
Minor BPS
61.5
0.36
1.5
69.9
36.2

Associated Gene:

Gene:
TPX2
Ensembl Gene ID:
ENSAPLG00000010382
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010870
15302757 - 15310458
7702