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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15308313_15308990_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15308313 - 15308990
Intron Length:
678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTCAG
5'SS Class:
major
3'SS Sequence:
TTTAATACCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTAATTTAATA
Flanking Amino Acid:
EEVPPLKKMRISGSKEKLTE
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
63.5
42.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
68.3
0.41
0.9
60
41.1
Minor 5ss
42.1
-0.9
2.8
53.9
43.5
Minor BPS
61.5
0.36
1.5
69.9
36.2

Associated Gene:

Gene:
TPX2
Ensembl Gene ID:
ENSAPLG00000010382
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023642
15302757 - 15312456
9700