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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15308492_15308990_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15308492 - 15308990
Intron Length:
499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTCAG
5'SS Class:
major
3'SS Sequence:
TTCCCTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AGTTCCCAAACT
Flanking Amino Acid:
EEVPPLKKMRILSVPGKARR
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
63.5
42.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85
0.79
0.7
79.7
25.9
Minor 5ss
42.1
-0.9
2.8
53.9
43.5
Minor BPS
58.7
0.35
2
80.26
41.1

Associated Gene:

Gene:
TPX2
Ensembl Gene ID:
ENSAPLG00000010382
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010870
15302757 - 15310458
7702