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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_153205_154247_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
153205 - 154247
Intron Length:
1043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
TCTCTCCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
AGGTTGTGAAAG
Flanking Amino Acid:
PKQLFVIRNTHEAPPGFEVG
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.9
0.33
1.3
57.9
41.8
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
80.9
0.7
0.7
72.9
31.9
Minor 5ss
29.5
-2.4
3.1
39
39.8
Minor BPS
41.6
-0.7
2.1
44.33
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014035
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014666
145170 - 162852
17683