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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15324455_15324883_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15324455 - 15324883
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
AGAACTTTAACT
Flanking Amino Acid:
LLRGSTDSLQAPMSRQSLGA
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
87.4
0.84
0.8
80.5
37
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
69.8
0.7
1.3
77.21
38.6

Associated Gene:

Gene:
NCOA5
Ensembl Gene ID:
ENSAPLG00000013733
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014316
15323805 - 15338889
15085