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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15327317_15329621_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15327317 - 15329621
Intron Length:
2305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTGTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
ACTTGTAAAACT
Flanking Amino Acid:
CSVIVVNKQTKEYAESVGRK
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
74.4
35.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
68.5
0.42
1
69.1
41.8
Minor 5ss
34.5
-1.8
3
40.9
39.3
Minor BPS
45
-0.3
2.2
66.51
44.6

Associated Gene:

Gene:
NCOA5
Ensembl Gene ID:
ENSAPLG00000013733
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014316
15323805 - 15338889
15085