Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15383922_15393901_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15383922 - 15393901

Intron Length:

9980

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTGCG

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTCCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTGAT

U12 Branch Point Sequence:

ATGGGAGTGACT

Flanking Amino Acid:

SHHFSLLDIKDNTAAVHTQR

Intron Amino Acid Position:

500

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

69.7

41.3

Major BPS

68.9

0.47

1.2

60.7

45.9

Major PPT

89.3

0.88

0.6

22.7

Minor 5ss

32.6

-2

3.1

33.4

41.6

Minor BPS

38.4

-0.8

2.5

57.86

45.3

Associated Gene:

Gene:

CDH22

Ensembl Gene ID:

ENSAPLG00000012691

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044206

15381823 - 15435106

53284

ENSAPLT00000031042

15381823 - 15435106

53284

ENSAPLT00000013267

15381823 - 15421329

39507