Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15394441_15404234_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15394441 - 15404234

Intron Length:

9794

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGATGG

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTGTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTGAA

U12 Branch Point Sequence:

TCCCTCTGAAGC

Flanking Amino Acid:

HNITVLAMEADNHSQVSRAS

Intron Amino Acid Position:

420

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

68.5

39.2

Major BPS

69.8

0.49

37.5

Major PPT

89.3

0.88

0.8

87.9

29.4

Minor 5ss

31.9

-2.1

38.5

46.6

Minor BPS

-0.1

1.8

55.77

42.7

Associated Gene:

Gene:

CDH22

Ensembl Gene ID:

ENSAPLG00000012691

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044206

15381823 - 15435106

53284

ENSAPLT00000031042

15381823 - 15435106

53284

ENSAPLT00000013267

15381823 - 15421329

39507