Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15412222_15413255_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15412222 - 15413255

Intron Length:

1034

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTCCT

5'SS Class:

major

3'SS Sequence:

TTCTCTCCTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTGAC

U12 Branch Point Sequence:

GGAGCTGTGACC

Flanking Amino Acid:

VNDNPPRFPQKMYQFSIVET

Intron Amino Acid Position:

227

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

1.1

69.1

41.8

Major BPS

0.22

1.2

52.4

43.3

Major PPT

85.3

0.79

0.7

77.4

31.4

Minor 5ss

38.1

-1.3

48.4

41.1

Minor BPS

44.5

-0.4

2.1

51.42

39.9

Associated Gene:

Gene:

CDH22

Ensembl Gene ID:

ENSAPLG00000012691

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013267

15381823 - 15421329

39507

ENSAPLT00000044206

15381823 - 15435106

53284

ENSAPLT00000031042

15381823 - 15435106

53284