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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15413424_15420709_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15413424 - 15420709
Intron Length:
7286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TGCCAACTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TGTGCCTGCACT
Flanking Amino Acid:
EQHFTVDSKTGVIRTAVADL
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
69.5
0.44
1
58.5
41.9
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
54.8
0.23
2.1
77.65
44.4

Associated Gene:

Gene:
CDH22
Ensembl Gene ID:
ENSAPLG00000012691
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044206
15381823 - 15435106
53284
ENSAPLT00000031042
15381823 - 15435106
53284
ENSAPLT00000013267
15381823 - 15421329
39507