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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15420830_15429044_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15420830 - 15429044
Intron Length:
8215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTCTC
5'SS Class:
major
3'SS Sequence:
GTCCCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TCCTCCCTGACT
Flanking Amino Acid:
IGSVAELSPVGTSVMQVMAS
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.8
42.2
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
71.9
0.49
0.9
65
36.3
Minor 5ss
37.5
-1.4
3.3
49.5
41.3
Minor BPS
65.5
0.57
1.7
79.98
42.2

Associated Gene:

Gene:
CDH22
Ensembl Gene ID:
ENSAPLG00000012691
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044206
15381823 - 15435106
53284