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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15426128_15429044_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15426128 - 15429044
Intron Length:
2917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTCTC
5'SS Class:
major
3'SS Sequence:
TTCTGTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTCAT
U12 Branch Point Sequence:
GTGACCCCATTC
Flanking Amino Acid:
IGSVAELSPVDLTGACAQGG
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.8
42.2
Major BPS
67.1
0.42
1.4
71.4
45.1
Major PPT
85.1
0.79
0.8
76.9
37.4
Minor 5ss
37.5
-1.4
3.3
49.5
41.3
Minor BPS
40.9
-0.7
2
49.11
40.9

Associated Gene:

Gene:
CDH22
Ensembl Gene ID:
ENSAPLG00000012691
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031042
15381823 - 15435106
53284