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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_154349_154892_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
154349 - 154892
Intron Length:
544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCATGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTCTCTTCATG
Flanking Amino Acid:
ETGHKLQPPKGVLGYKEEEF
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
59.4
0.21
1.7
74.2
35.2
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
58.5
0.12
1.8
68.07
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014035
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014666
145170 - 162852
17683