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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15497054_15497764_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15497054 - 15497764
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
TATTCTGCTACT
Flanking Amino Acid:
TQILMQKAELGLPLSISEKL
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
79.1
0.66
0.8
72.7
37.5
Minor 5ss
42.1
-0.9
2.4
51.8
44.8
Minor BPS
46.3
-0.2
2.4
73.04
43.7

Associated Gene:

Gene:
SLC35C2
Ensembl Gene ID:
ENSAPLG00000012587
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036930
15495932 - 15498206
2275