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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15497481_15497764_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15497481 - 15497764
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTACG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTGTTGTTACCT
Flanking Amino Acid:
TQILMQKAELGLQNPIDIMF
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
86.7
0.83
0.7
84.4
23.4
Minor 5ss
42.1
-0.9
2.4
51.8
44.8
Minor BPS
53.5
0.19
2.3
78.77
43.9

Associated Gene:

Gene:
SLC35C2
Ensembl Gene ID:
ENSAPLG00000012587
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028330
15495163 - 15498206
3044
ENSAPLT00000013141
15495680 - 15498424
2745