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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15497934_15498113_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15497934 - 15498113
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTTGTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
TCTGTAGTGATT
Flanking Amino Acid:
FSLLFKLEEMRVALVLVVLL
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.2
36.3
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
76.2
0.59
1
68.7
42
Minor 5ss
33.9
-1.8
3.7
46.6
43.5
Minor BPS
42.7
-0.4
2.2
62.65
42.5

Associated Gene:

Gene:
SLC35C2
Ensembl Gene ID:
ENSAPLG00000012587
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036930
15495932 - 15498206
2275
ENSAPLT00000028330
15495163 - 15498206
3044
ENSAPLT00000013141
15495680 - 15498424
2745