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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15498475_15501730_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15498475 - 15501730
Intron Length:
3256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGATTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTCTTTGATT
Flanking Amino Acid:
LNFIAPNKYELCLLHWILD*
Intron Amino Acid Position:
655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
84.3
0.77
0.8
81.5
35.9
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
83.7
1.14
0.9
94.68
25

Associated Gene:

Gene:
ELMO2
Ensembl Gene ID:
ENSAPLG00000011948
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036058
15497524 - 15523532
26009