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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15501174_15501730_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15501174 - 15501730
Intron Length:
557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTTAT
U12 Branch Point Sequence:
TTCTTCTCTACA
Flanking Amino Acid:
LNFIAPNKYEYCIWIDGLNA
Intron Amino Acid Position:
667

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
63.9
0.35
1.2
55
42.7
Major PPT
89
0.88
0.6
84
24.2
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
56.1
0.18
1.9
71.06
41

Associated Gene:

Gene:
ELMO2
Ensembl Gene ID:
ENSAPLG00000011948
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020205
15500619 - 15524104
23486
ENSAPLT00000012504
15500619 - 15524104
23486
ENSAPLT00000048021
15500619 - 15518801
18183
ENSAPLT00000036380
15500619 - 15523532
22914
ENSAPLT00000025084
15500619 - 15524104
23486