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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_15502674_15502989_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15502674 - 15502989
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
CTATGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCTTGCTCAGTT
Flanking Amino Acid:
FRKIGNRRRQERFWYCRLAL
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
81.3
0.7
0.9
72.8
42.1
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
48.5
-0
2.2
71.83
45.5

Associated Gene:

Gene:
ELMO2
Ensembl Gene ID:
ENSAPLG00000011948
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036058
15497524 - 15523532
26009
ENSAPLT00000025084
15500619 - 15524104
23486
ENSAPLT00000020205
15500619 - 15524104
23486
ENSAPLT00000048021
15500619 - 15518801
18183
ENSAPLT00000012504
15500619 - 15524104
23486
ENSAPLT00000036380
15500619 - 15523532
22914